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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5tx1:F
    (3.7)    		 BS02 >5tx1:Y (identical to 8a42:G, 6az0:G, 7cgo:GD, 7e81:GD, 6f5p:H, 4ij8:I, 6j3z:7, 6j40:7, 2jbu:C, 2jbu:D, 5k4l:F, 5k4l:G, 2p6a:E, 6pdw:G, 6pdy:G, 6pe0:G, 7pua:Ua, 7pub:UI, 7s78:6, 5tx1:X, 7upr:G, 7upt:G, 6uqe:X, 5v9t:G, 6xi2:G, 6yxx:UA, 6yxx:Uf, 7z0h:X, 7z31:X, 2z5o:B, 6z7n:V)
    AAAAAAAAAA
    		 ? GO:0005198 ... Q3S8B3 28508067
    2 5tx1:H
    (3.7)    		 BS03 >5tx1:Y (identical to 8a42:G, 6az0:G, 7cgo:GD, 7e81:GD, 6f5p:H, 4ij8:I, 6j3z:7, 6j40:7, 2jbu:C, 2jbu:D, 5k4l:F, 5k4l:G, 2p6a:E, 6pdw:G, 6pdy:G, 6pe0:G, 7pua:Ua, 7pub:UI, 7s78:6, 5tx1:X, 7upr:G, 7upt:G, 6uqe:X, 5v9t:G, 6xi2:G, 6yxx:UA, 6yxx:Uf, 7z0h:X, 7z31:X, 2z5o:B, 6z7n:V)
    AAAAAAAAAA
    		 ? GO:0005198 ... Q3S8B3 28508067
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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