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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8xoo:O
    (1.84)    		 BS01 >8xoo:X (identical to 3a0b:N, 3a0b:n, 7a23:r, 7a24:r, 5a31:U, 5fn3:G, 6fti:0, 7kra:N, 7ktx:N, 6msg:v, 7nfy:G, 6oab:H, 8oqz:E, 4phz:N, 6qs4:S, 6qs6:S, 6qs7:S, 6qs8:S, 7qv1:I, 7qv2:I, 7qv3:I, 7qws:s, 6rn2:S, 6rn3:S, 6rn4:S, 6w1z:X, 6w20:X, 6w21:X, 6w22:X, 6w23:X, 6w24:X, 8xon:X, 7y8r:W)
    AAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... A0A6G5RIJ6 38501868
    2 8xoo:P
    (1.84)    		 BS01 >8xoo:X (identical to 3a0b:N, 3a0b:n, 7a23:r, 7a24:r, 5a31:U, 5fn3:G, 6fti:0, 7kra:N, 7ktx:N, 6msg:v, 7nfy:G, 6oab:H, 8oqz:E, 4phz:N, 6qs4:S, 6qs6:S, 6qs7:S, 6qs8:S, 7qv1:I, 7qv2:I, 7qv3:I, 7qws:s, 6rn2:S, 6rn3:S, 6rn4:S, 6w1z:X, 6w20:X, 6w21:X, 6w22:X, 6w23:X, 6w24:X, 8xon:X, 7y8r:W)
    AAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... A0A6G5RIJ6 38501868
    3 8xoo:Q
    (1.84)    		 BS01 >8xoo:X (identical to 3a0b:N, 3a0b:n, 7a23:r, 7a24:r, 5a31:U, 5fn3:G, 6fti:0, 7kra:N, 7ktx:N, 6msg:v, 7nfy:G, 6oab:H, 8oqz:E, 4phz:N, 6qs4:S, 6qs6:S, 6qs7:S, 6qs8:S, 7qv1:I, 7qv2:I, 7qv3:I, 7qws:s, 6rn2:S, 6rn3:S, 6rn4:S, 6w1z:X, 6w20:X, 6w21:X, 6w22:X, 6w23:X, 6w24:X, 8xon:X, 7y8r:W)
    AAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... A0A6G5RIJ6 38501868
    4 8xoo:R
    (1.84)    		 BS01 >8xoo:X (identical to 3a0b:N, 3a0b:n, 7a23:r, 7a24:r, 5a31:U, 5fn3:G, 6fti:0, 7kra:N, 7ktx:N, 6msg:v, 7nfy:G, 6oab:H, 8oqz:E, 4phz:N, 6qs4:S, 6qs6:S, 6qs7:S, 6qs8:S, 7qv1:I, 7qv2:I, 7qv3:I, 7qws:s, 6rn2:S, 6rn3:S, 6rn4:S, 6w1z:X, 6w20:X, 6w21:X, 6w22:X, 6w23:X, 6w24:X, 8xon:X, 7y8r:W)
    AAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... A0A6G5RIJ6 38501868
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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