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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6q3g:R6
    (3.8)    		 BS01 >6q3g:W6 (identical to 6iat:G, 6ib1:G, 6q3g:G1, 6q3g:O1, 6q3g:V1, 6q3g:d1, 6q3g:l1, 6q3g:G3, 6q3g:O3, 6q3g:W3, 6q3g:a3, 6q3g:d3, 6q3g:G4, 6q3g:O4, 6q3g:V4, 6q3g:d4, 6q3g:k4, 6q3g:G6, 6q3g:O6, 6q3g:e6, 6q3g:m6, 6q3g:G7, 6q3g:O7, 6q3g:W7, 6q3g:e7, 6q3g:m7, 6q3g:G8, 6q3g:O8, 6q3g:W8, 6q3g:e8, 6q3g:m8, 6q3g:GE, 6q3g:IE, 6q3g:QE, 6q3g:YE, 6q3g:gE, 6q3g:GG, 6q3g:OG, 6q3g:WG, 6q3g:eG, 6q3g:mG, 6q3g:GL, 6q3g:OL, 6q3g:WL, 6q3g:eL, 6q3g:iL, 6q3g:GQ, 6q3g:OQ, 6q3g:WQ, 6q3g:aQ, 6q3g:hQ, 6q3g:GR, 6q3g:OR, 6q3g:WR, 6q3g:eR, 6q3g:lR)
    MYEGNNMRSMMGTSYEDSRLNKRTELN
    		 ? N/A Q859I3 31663016
    2 6q3g:T6
    (3.8)    		 BS01 >6q3g:W6 (identical to 6iat:G, 6ib1:G, 6q3g:G1, 6q3g:O1, 6q3g:V1, 6q3g:d1, 6q3g:l1, 6q3g:G3, 6q3g:O3, 6q3g:W3, 6q3g:a3, 6q3g:d3, 6q3g:G4, 6q3g:O4, 6q3g:V4, 6q3g:d4, 6q3g:k4, 6q3g:G6, 6q3g:O6, 6q3g:e6, 6q3g:m6, 6q3g:G7, 6q3g:O7, 6q3g:W7, 6q3g:e7, 6q3g:m7, 6q3g:G8, 6q3g:O8, 6q3g:W8, 6q3g:e8, 6q3g:m8, 6q3g:GE, 6q3g:IE, 6q3g:QE, 6q3g:YE, 6q3g:gE, 6q3g:GG, 6q3g:OG, 6q3g:WG, 6q3g:eG, 6q3g:mG, 6q3g:GL, 6q3g:OL, 6q3g:WL, 6q3g:eL, 6q3g:iL, 6q3g:GQ, 6q3g:OQ, 6q3g:WQ, 6q3g:aQ, 6q3g:hQ, 6q3g:GR, 6q3g:OR, 6q3g:WR, 6q3g:eR, 6q3g:lR)
    MYEGNNMRSMMGTSYEDSRLNKRTELN
    		 ? N/A Q859I3 31663016
    3 6q3g:V6
    (3.8)    		 BS01 >6q3g:W6 (identical to 6iat:G, 6ib1:G, 6q3g:G1, 6q3g:O1, 6q3g:V1, 6q3g:d1, 6q3g:l1, 6q3g:G3, 6q3g:O3, 6q3g:W3, 6q3g:a3, 6q3g:d3, 6q3g:G4, 6q3g:O4, 6q3g:V4, 6q3g:d4, 6q3g:k4, 6q3g:G6, 6q3g:O6, 6q3g:e6, 6q3g:m6, 6q3g:G7, 6q3g:O7, 6q3g:W7, 6q3g:e7, 6q3g:m7, 6q3g:G8, 6q3g:O8, 6q3g:W8, 6q3g:e8, 6q3g:m8, 6q3g:GE, 6q3g:IE, 6q3g:QE, 6q3g:YE, 6q3g:gE, 6q3g:GG, 6q3g:OG, 6q3g:WG, 6q3g:eG, 6q3g:mG, 6q3g:GL, 6q3g:OL, 6q3g:WL, 6q3g:eL, 6q3g:iL, 6q3g:GQ, 6q3g:OQ, 6q3g:WQ, 6q3g:aQ, 6q3g:hQ, 6q3g:GR, 6q3g:OR, 6q3g:WR, 6q3g:eR, 6q3g:lR)
    MYEGNNMRSMMGTSYEDSRLNKRTELN
    		 ? N/A Q859I2 31663016
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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