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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6yxy:A8
    (3.1)    		 BS02 >6yxy:UM (identical to 5aka:6, 7aoi:UD, 8bvw:Y, 8j5s:E, 4jgj:X, 4jgj:Y, 7jr9:F, 8kic:G, 6lqv:X1, 6mw3:J, 5nui:M, 7nvr:Z, 7nvv:Y, 7nvw:Y, 7nvx:Y, 7nvy:Z, 7nvz:Z, 7nw0:Z, 6nyy:J, 3p7o:B, 7pua:UM, 7pua:UN, 7pua:UQ, 3pv3:H, 7q6i:X, 7q6i:Y, 8rbx:1, 1rqf:O, 7rwc:P, 3wa0:J, 4wz7:AQ, 7x0y:E, 7x0y:F, 8xud:M, 4ynn:I)
    AAAAAAAA
    		 ? N/A D0A1K1 32679035
    2 6yxy:AF
    (3.1)    		 BS02 >6yxy:UM (identical to 5aka:6, 7aoi:UD, 8bvw:Y, 8j5s:E, 4jgj:X, 4jgj:Y, 7jr9:F, 8kic:G, 6lqv:X1, 6mw3:J, 5nui:M, 7nvr:Z, 7nvv:Y, 7nvw:Y, 7nvx:Y, 7nvy:Z, 7nvz:Z, 7nw0:Z, 6nyy:J, 3p7o:B, 7pua:UM, 7pua:UN, 7pua:UQ, 3pv3:H, 7q6i:X, 7q6i:Y, 8rbx:1, 1rqf:O, 7rwc:P, 3wa0:J, 4wz7:AQ, 7x0y:E, 7x0y:F, 8xud:M, 4ynn:I)
    AAAAAAAA
    		 ? GO:0003735 ... D0A7A6 32679035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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