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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6vmi:I
    (2.96)    		 BS02 >6vmi:TB (identical to 6gaw:DL, 6gaw:FL, 6gaw:GL, 6gb2:DL, 6gb2:FL, 6gb2:GL, 7l08:TB, 7l20:TB, 7nqh:DL, 7nqh:FL, 7nqh:GL, 7nql:DL, 7nql:FL, 7nql:GL, 7nsh:DL, 7nsh:FL, 7nsh:GL, 7nsi:DL, 7nsi:FL, 7nsi:GL, 7nsj:DL, 7nsj:FL, 7nsj:GL, 8oin:B2, 8oin:B4, 8oin:B5, 8oiq:B2, 8oiq:B4, 8oiq:B5, 6vlz:TB, 6ydp:DL, 6ydp:FL, 6ydp:GL, 6ydw:DL, 6ydw:FL, 6ydw:GL)
    IQQLVQDIASLTLLEISDLNELLKKTL
    		 ? GO:0003723 ... Q7Z7H8 32737313
    2 6vmi:TA
    (2.96)    		 BS01 >6vmi:TB (identical to 6gaw:DL, 6gaw:FL, 6gaw:GL, 6gb2:DL, 6gb2:FL, 6gb2:GL, 7l08:TB, 7l20:TB, 7nqh:DL, 7nqh:FL, 7nqh:GL, 7nql:DL, 7nql:FL, 7nql:GL, 7nsh:DL, 7nsh:FL, 7nsh:GL, 7nsi:DL, 7nsi:FL, 7nsi:GL, 7nsj:DL, 7nsj:FL, 7nsj:GL, 8oin:B2, 8oin:B4, 8oin:B5, 8oiq:B2, 8oiq:B4, 8oiq:B5, 6vlz:TB, 6ydp:DL, 6ydp:FL, 6ydp:GL, 6ydw:DL, 6ydw:FL, 6ydw:GL)
    IQQLVQDIASLTLLEISDLNELLKKTL
    		 ? GO:0003723 ... P52815 32737313
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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