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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7zs9:7
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 5.6.2.4 GO:0000019 ... Q00578 36411341
    2 7zs9:M
    (3.1)    		 BS01 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000993 ... P29055 36411341
    3 7zs9:O
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000126 ... P13393 36411341
    4 7zs9:R
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000166 ... P41896 36411341
    5 7zs9:U
    (3.1)    		 BS01 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0005672 ... P32773 36411341
    6 7zs9:W
    (3.1)    		 BS01 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000993 ... P36100 36411341
    7 7zs9:a
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P84233 36411341
    8 7zs9:b
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P62799 36411341
    9 7zs9:c
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P06897 36411341
    10 7zs9:d
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P02281 36411341
    11 7zs9:e
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P84233 36411341
    12 7zs9:f
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P62799 36411341
    13 7zs9:g
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P06897 36411341
    14 7zs9:h
    (3.1)    		 BS02 >7zs9:T (identical to 8ceo:T, 7zsa:T)
    atcgatgtatatatctgacacgtgcctggagactagggagtaatcccctt
ggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctag
agctgtctacgaccaacacagcgcagaagagctatgatatttttatgtat
gtacaacacacatcggaggtgaatcgaacgttccatagctattatataca
cagcgtgct
    		 ? GO:0000786 ... P02281 36411341
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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