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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5tyc:A
    (2.101)    		 BS01 >5tyc:T (identical to 6ak8:T, 6akh:T, 6ipd:T, 6ipe:T, 7ksz:T, 7kt0:T, 7kt1:T, 7kt2:T, 7kt3:T, 7kt4:T, 7kt5:T, 7kt6:T, 7kt7:T, 7kt8:T, 7kt9:T, 7ktn:T, 4lzg:T, 4m04:T, 4m0a:T, 5twp:T, 5twq:T, 5twr:T, 5tws:T, 5txx:T, 5txz:T, 5tyb:T, 5tyd:T, 5tye:T, 5tyf:T, 5tyg:T, 5tyu:T, 5tyv:T, 5tyw:T, 5tyx:T, 5tyy:T, 5tyz:T, 6vez:T, 6vf0:T, 6vf1:T, 6vf2:T, 6vf3:T, 6vf4:T, 6vf5:T, 6vf6:T, 6vf7:T, 5vz7:T, 5vz8:T, 5vz9:T, 5vza:T, 5vzb:T, 5vzc:T, 5vzd:T, 5vze:T, 5vzf:T, 5vzg:T, 5vzh:T, 5vzi:T)
    cggcatacg
    		 2.7.7.7 GO:0003677 ... Q9NP87 28811466
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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