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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2isp:A
    (2.2)    		 BS01 >2isp:T (identical to 5bol:T, 5bom:T, 5bpc:T, 3c2l:T, 6dia:T, 6dic:T, 4do9:T, 4doa:T, 4dob:T, 4doc:T, 2iso:T, 3isc:T, 3isd:T, 3jpn:T, 3jpo:T, 3jpp:T, 3jpq:T, 3jpr:T, 3jps:T, 3jpt:T, 7k96:T, 7k97:T, 6n2r:T, 6n2s:T, 6n2t:T, 6nkr:T, 6nks:T, 6nkt:T, 2pxi:T, 4ub2:T, 4ub3:T, 4ub4:T, 4ub5:T, 4ubb:T, 4ubc:T, 6uok:B, 6uok:T, 6uol:T, 8vf8:T, 8vf9:T, 8vfa:T, 8vfb:T, 8vfc:T, 5wnx:T)
    ccgaccgcgcatcagc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 17209556 PDBbind: Kd=0.75uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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