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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1xf2:H
    (2.3)    		 BS01 >1xf2:T (identical to 1cbv:D, 2d7d:D, 5d8f:C, 5ith:B, 6jdg:E, 6jip:B, 5k83:I, 5k83:J, 5k83:H, 1krp:B, 1ksp:B, 1lau:D, 7lwa:B, 4mgu:C, 1noy:S, 5odn:P, 5odn:L, 5odp:N, 5odp:P, 8q44:C, 3udg:H, 3udg:I, 8v08:C, 8v08:D, 3vdy:D, 3vdy:G, 1xi1:C, 1xi1:D, 7z3x:E)
    ttt
    		 N/A N/A N/A 15784256
    2 1xf2:L
    (2.3)    		 BS01 >1xf2:T (identical to 1cbv:D, 2d7d:D, 5d8f:C, 5ith:B, 6jdg:E, 6jip:B, 5k83:I, 5k83:J, 5k83:H, 1krp:B, 1ksp:B, 1lau:D, 7lwa:B, 4mgu:C, 1noy:S, 5odn:P, 5odn:L, 5odp:N, 5odp:P, 8q44:C, 3udg:H, 3udg:I, 8v08:C, 8v08:D, 3vdy:D, 3vdy:G, 1xi1:C, 1xi1:D, 7z3x:E)
    ttt
    		 N/A N/A N/A 15784256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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