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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6yft:JL
    (3.5)    		 BS01 >6yft:SZ (identical to 6yft:RA, 6yft:RB, 6yft:RC, 6yft:RD, 6yft:RE, 6yft:RF, 6yft:RG, 6yft:RH, 6yft:RI, 6yft:RJ, 6yft:RK, 6yft:RL, 6yft:RM, 6yft:RN, 6yft:RO, 6yft:RP, 6yft:RQ, 6yft:RR, 6yft:RS, 6yft:RT, 6yft:RU, 6yft:RV, 6yft:RW, 6yft:RX, 6yft:RY, 6yft:RZ, 6yft:SA, 6yft:SB, 6yft:SC, 6yft:SD, 6yft:SE, 6yft:SF, 6yft:SG, 6yft:SH, 6yft:SI, 6yft:SJ, 6yft:SK, 6yft:SL, 6yft:SM, 6yft:SN, 6yft:SO, 6yft:SP, 6yft:SQ, 6yft:SR, 6yft:SS, 6yft:ST, 6yft:SU, 6yft:SV, 6yft:SW, 6yft:SX, 6yft:SY, 6yft:TA, 6yft:TB, 6yft:TC, 6yft:TD, 6yft:TE, 6yft:TF, 6yft:TG, 6yft:TH)
    auauauauauuauauauaua
<<<<<<<<<.>>>>>>>>>.
    		 N/A N/A N/A 32917600
    2 6yft:MX
    (3.5)    		 BS01 >6yft:SZ (identical to 6yft:RA, 6yft:RB, 6yft:RC, 6yft:RD, 6yft:RE, 6yft:RF, 6yft:RG, 6yft:RH, 6yft:RI, 6yft:RJ, 6yft:RK, 6yft:RL, 6yft:RM, 6yft:RN, 6yft:RO, 6yft:RP, 6yft:RQ, 6yft:RR, 6yft:RS, 6yft:RT, 6yft:RU, 6yft:RV, 6yft:RW, 6yft:RX, 6yft:RY, 6yft:RZ, 6yft:SA, 6yft:SB, 6yft:SC, 6yft:SD, 6yft:SE, 6yft:SF, 6yft:SG, 6yft:SH, 6yft:SI, 6yft:SJ, 6yft:SK, 6yft:SL, 6yft:SM, 6yft:SN, 6yft:SO, 6yft:SP, 6yft:SQ, 6yft:SR, 6yft:SS, 6yft:ST, 6yft:SU, 6yft:SV, 6yft:SW, 6yft:SX, 6yft:SY, 6yft:TA, 6yft:TB, 6yft:TC, 6yft:TD, 6yft:TE, 6yft:TF, 6yft:TG, 6yft:TH)
    auauauauauuauauauaua
<<<<<<<<<.>>>>>>>>>.
    		 N/A N/A N/A 32917600
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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