Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)
    Site
    #
    RNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5bkl:D
    (2.94)
    BS01 >5bkl:S (identical to 5bkl:P, 5bkl:UU, 5bkn:P, 8cdu:B, 8cec:B, 8ced:B, 8cee:B, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
    .......
    ? GO:0005198 ... P17574 34866603
    2 5bkl:II
    (2.94)
    BS01 >5bkl:S (identical to 5bkl:P, 5bkl:UU, 5bkn:P, 8cdu:B, 8cec:B, 8ced:B, 8cee:B, 1cvj:N, 1cvj:O, 1cvj:P, 1cvj:R, 1cvj:S, 1cvj:T, 4ht8:I, 4ht8:K, 4ht9:D, 2jea:C, 5jjk:G, 5jrc:E, 7m3t:P, 7m3t:Y, 7m3t:TT, 7m50:P, 7m50:V, 7m50:TT, 2po1:C, 4tyw:B, 4tz0:B, 4tz6:B, 7wnu:C)
    aaaaaaa
    .......
    ? GO:0005198 ... P17574 34866603

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218