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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6wqh:A
    (3.6)    		 BS01 >6wqh:S (identical to 8apo:Um, 7cgo:GA, 7cgo:GC, 5cq9:D, 7e81:GA, 7e81:GC, 3gt8:X, 5l3t:F, 7ng5:G, 6nyy:G, 6nyy:H, 7p09:G, 7p0m:G, 6pl6:D, 6uqe:Y, 6vzr:G, 7z2z:X)
    AAAAAAAAAAA
    		 3.4.21.53 GO:0004176 ... A0A059VAZ3 34563541
    2 6wqh:B
    (3.6)    		 BS01 >6wqh:S (identical to 8apo:Um, 7cgo:GA, 7cgo:GC, 5cq9:D, 7e81:GA, 7e81:GC, 3gt8:X, 5l3t:F, 7ng5:G, 6nyy:G, 6nyy:H, 7p09:G, 7p0m:G, 6pl6:D, 6uqe:Y, 6vzr:G, 7z2z:X)
    AAAAAAAAAAA
    		 3.4.21.53 GO:0004176 ... A0A059VAZ3 34563541
    3 6wqh:C
    (3.6)    		 BS01 >6wqh:S (identical to 8apo:Um, 7cgo:GA, 7cgo:GC, 5cq9:D, 7e81:GA, 7e81:GC, 3gt8:X, 5l3t:F, 7ng5:G, 6nyy:G, 6nyy:H, 7p09:G, 7p0m:G, 6pl6:D, 6uqe:Y, 6vzr:G, 7z2z:X)
    AAAAAAAAAAA
    		 3.4.21.53 GO:0004176 ... A0A059VAZ3 34563541
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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