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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3ktk:C
    (2.6)    		 BS02 >3ktk:S (identical to 3ktj:H, 3ktj:I, 3ktj:J, 3ktj:K, 3ktj:L, 3ktj:M, 3ktj:N, 3ktk:O, 3ktk:P, 3ktk:Q, 3ktk:R, 3ktk:T, 3ktk:U, 3ktk:V, 3ktk:W, 3ktk:X, 3ktk:Y, 3ktk:Z, 3ktk:0, 3ktk:1)
    tFSPKAP
    		 3.4.21.92 GO:0004176 ... P80244 20305655
    2 3ktk:D
    (2.6)    		 BS01 >3ktk:S (identical to 3ktj:H, 3ktj:I, 3ktj:J, 3ktj:K, 3ktj:L, 3ktj:M, 3ktj:N, 3ktk:O, 3ktk:P, 3ktk:Q, 3ktk:R, 3ktk:T, 3ktk:U, 3ktk:V, 3ktk:W, 3ktk:X, 3ktk:Y, 3ktk:Z, 3ktk:0, 3ktk:1)
    tFSPKAP
    		 3.4.21.92 GO:0004176 ... P80244 20305655
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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