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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5iro:Q
    (2.64)    		 BS01 >5iro:R (identical to 1ao7:C, 2av1:C, 2av1:F, 2av7:C, 2av7:F, 1bd2:C, 1duz:C, 1duz:F, 4e5x:C, 4e5x:F, 4ftv:C, 1hhk:C, 1hhk:F, 1im3:C, 1im3:G, 1im3:K, 1im3:O, 5iro:B, 5iro:F, 5iro:J, 5iro:N, 5iro:V, 3ixa:C, 3ixa:F, 6uz1:C, 6uz1:H)
    LLFGYPVYV
    		 ? N/A P04439 27385781
    2 5iro:X
    (2.64)    		 BS01 >5iro:R (identical to 1ao7:C, 2av1:C, 2av1:F, 2av7:C, 2av7:F, 1bd2:C, 1duz:C, 1duz:F, 4e5x:C, 4e5x:F, 4ftv:C, 1hhk:C, 1hhk:F, 1im3:C, 1im3:G, 1im3:K, 1im3:O, 5iro:B, 5iro:F, 5iro:J, 5iro:N, 5iro:V, 3ixa:C, 3ixa:F, 6uz1:C, 6uz1:H)
    LLFGYPVYV
    		 ? GO:0005537 ... Q8BEL5 27385781
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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