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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 3e8e:P
    (2.0)
    BS01 >3e8e:Q (identical to 3ama:B, 3amb:B, 1apm:I, 1atp:I, 4axa:I, 7axv:B, 5bx6:B, 5bx7:B, 2c1a:I, 2c1b:I, 4c37:I, 1cdk:I, 1cdk:J, 1cmk:I, 2cpk:I, 4dh1:I, 4dh3:I, 4dh5:I, 4dh7:I, 4dh8:I, 3dnd:I, 3dne:I, 3e8c:H, 3e8c:I, 3e8c:K, 3e8e:G, 3e8e:C, 3e8e:F, 3e8e:J, 3e8e:N, 2erz:I, 2f7e:I, 2f7x:I, 2f7z:I, 8fe2:I, 8fe5:I, 8fe5:J, 8fec:I, 8fec:J, 1fmo:I, 6frx:B, 2gfc:I, 2gnf:I, 2gng:I, 2gnh:I, 2gni:I, 2gnj:I, 2gnl:I, 2gu8:C, 4ie9:I, 2jds:I, 2jdt:I, 2jdv:I, 3kkv:I, 5lcp:B, 5lct:B, 5lcu:B, 5m0u:B, 5m6v:B, 5m6y:B, 5m71:B, 3mvj:I, 3mvj:J, 3mvj:K, 5n23:B, 2oh0:I, 2ojf:I, 3ovv:B, 1q24:I, 1q61:I, 1q62:I, 1q8t:B, 1q8u:B, 1q8w:B, 6qj7:B, 2qur:B, 1rdq:I, 8sf8:B, 1smh:B, 1svg:B, 4uj1:B, 4uj2:B, 4uj9:B, 4uja:B, 4ujb:B, 2uvx:I, 2uvy:I, 2uvz:I, 2uw0:I, 2uw3:I, 2uw4:I, 2uw5:I, 2uw6:I, 2uw7:I, 2uw8:I, 2uzt:B, 2uzu:I, 2uzv:2, 2uzw:I, 1veb:B, 2vnw:I, 2vny:I, 2vo0:I, 2vo3:I, 2vo6:I, 2vo7:I, 3vqh:B, 4wb5:I, 4wb6:J, 4wb7:I, 4wb7:J, 4wb8:I, 1xh4:B, 1xh5:B, 1xh6:B, 1xh7:B, 1xh8:B, 1xh9:B, 1xha:B, 1ydr:I, 1yds:I, 1ydt:I, 4yxr:I, 4yxs:I, 4z83:I, 4z84:I, 3zo4:I)
    TTYADFIASGRTGRRNAIHD
    2.7.11.11 GO:0001669 ... P00517 19179070

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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