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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7nm3:A
    (1.4)    		 BS01 >7nm3:P (identical to 7bi3:P, 7biq:P, 7biw:P, 7biy:P, 7bjb:P, 7bjf:P, 7bjl:P, 7bjw:P, 7bkh:P, 7nj9:P, 7njb:P, 7nk5:P, 7nm1:P, 7nmh:P, 7nqp:P, 7nr7:P, 7nv4:P, 7nvi:P, 7nws:P, 7nxs:P, 7nxt:P, 7nxw:P, 7nxy:P, 7ny4:P, 7nye:P, 7nyf:P, 7nyg:P, 7nz6:P, 7nzg:P, 7nzk:P, 7nzv:P, 7o3a:P, 7o3f:P, 7o3p:P, 7o3q:P, 7o3r:P, 7o57:P, 7o59:P, 7o5a:P, 7o5c:P, 7o5f:P, 7o5g:P, 7o5o:P, 7o5p:P, 7o5u:P, 7o5x:P, 7o6g:P, 7o6i:P, 7o6j:P, 7o6k:P, 7o6m:P, 7o6o:P, 6qhl:P, 6yow:P, 6yox:P, 6yoy:P, 6yp2:P, 6yp3:P, 6yp8:P, 6ypl:P, 6ypy:P)
    AGSIPGRRS
    		 ? GO:0000122 ... P31947 34076416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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