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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6pka:D
    (2.25)    		 BS02 >6pka:P (identical to 6pka:H, 6pka:J, 6pka:O, 6pka:Q, 6pka:R, 6pka:U, 6pka:V, 6pka:X, 6pka:Y, 6pka:Z, 6pka:a, 6pka:b, 6pka:c, 5w18:H, 5w18:J, 5w18:O, 5w18:P, 5w18:Q, 5w18:R, 5w18:U, 5w18:V, 5w18:X, 5w18:Y, 5w18:Z, 5w18:a, 5w18:b, 5w18:c)
    FSPKAK
    		 3.4.21.92 GO:0004176 ... Q2G036 31588734
    2 6pka:E
    (2.25)    		 BS01 >6pka:P (identical to 6pka:H, 6pka:J, 6pka:O, 6pka:Q, 6pka:R, 6pka:U, 6pka:V, 6pka:X, 6pka:Y, 6pka:Z, 6pka:a, 6pka:b, 6pka:c, 5w18:H, 5w18:J, 5w18:O, 5w18:P, 5w18:Q, 5w18:R, 5w18:U, 5w18:V, 5w18:X, 5w18:Y, 5w18:Z, 5w18:a, 5w18:b, 5w18:c)
    FSPKAK
    		 3.4.21.92 GO:0004176 ... Q2G036 31588734
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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