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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8icz:A
    (3.1)    		 BS02 >8icz:P (identical to 8ica:P, 8icb:P, 8icc:P, 8icf:P, 8icg:P, 8ich:P, 8ici:P, 8icj:P, 8icl:P, 8icm:P, 8ico:P, 8icq:P, 8ics:P, 8ict:P, 8icx:P, 9ica:P, 9icb:P, 9icc:P, 9ice:P, 9icg:P, 9ich:P, 9icj:P, 9icy:P, 1zqa:P, 1zqb:P, 1zqc:P, 1zqd:P, 1zqe:P, 1zqf:P, 1zqg:P, 1zqh:P, 1zqi:P, 1zqj:P, 1zqk:P, 1zql:P, 1zqm:P, 1zqn:P, 1zqo:P, 1zqp:P, 1zqq:P, 1zqr:P, 1zqs:P, 1zqt:P)
    tctaatg
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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