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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5vza:A
    (1.501)
    BS02 >5vza:P (identical to 6ak8:P, 6ak9:P, 6akh:P, 7co6:P, 7co8:P, 7co9:P, 7coa:P, 7cob:P, 7coc:P, 3g2c:I, 7kss:P, 7ksz:P, 7kt0:P, 7kt3:P, 7kta:P, 7ktj:P, 7ktk:P, 4lzg:P, 4m04:P, 6p1m:P, 6p1n:P, 6p1p:P, 6p1r:P, 6p1t:P, 6p1v:P, 6p1w:P, 5twp:P, 5twr:P, 5txx:P, 6vez:P, 6vf3:P, 6vf7:P, 6vf8:P, 6vf9:P, 6vfa:P, 5vz7:P, 5vzd:P, 5vzg:P, 6wic:P, 4ycx:P, 4yd1:P)
    cgta
    2.7.7.7 GO:0003677 ... Q9NP87 28911097

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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