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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3qer:A
    (1.96)    		 BS02 >3qer:P (identical to 3cfr:P, 4dtr:P, 4dts:P, 4dtu:P, 4dtx:P, 4e3s:P, 4fjg:P, 4fji:P, 4fjj:P, 4fjk:P, 4fjl:P, 4fjm:P, 4fjn:P, 4fjx:P, 4fk0:P, 4fk2:P, 4fk4:P, 4i9q:P, 4i9q:C, 4j2a:P, 4khn:D, 4khn:F, 3lzi:P, 3lzj:P, 4m3u:P, 3nae:P, 3nci:P, 3ndk:P, 3ne6:P, 3ngi:P, 3nhg:P, 1q9x:I, 1q9x:J, 1q9x:K, 1q9x:L, 3qei:P, 3qep:P, 3qes:P, 3qet:P, 3qev:P, 3qew:P, 3qex:P, 3qnn:P, 3qno:P, 3rwu:P, 3s9h:P, 3scx:P, 3si6:P, 3sjj:P, 3snn:P, 3spy:P, 3spz:P, 3sq0:P, 3sq1:P, 3uiq:P)
    gcggactgcttac
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=140uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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