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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6udo:G
    (3.21)    		 BS01 >6udo:O (identical to 6u8n:I, 6u8n:J, 6u8n:K, 6u8n:L, 6u8n:M, 6u8n:N, 6u8n:O, 6u8n:P, 6u8r:M, 6u8r:N, 6u8r:O, 6u8r:P, 6u8r:I, 6u8r:J, 6u8r:K, 6u8r:L, 6u9o:I, 6u9o:J, 6u9o:K, 6u9o:L, 6u9o:M, 6u9o:N, 6u9o:O, 6u9o:P, 6ua2:M, 6ua2:N, 6ua2:O, 6ua2:P, 6ua2:I, 6ua2:J, 6ua2:K, 6ua2:L, 6ua4:M, 6ua4:N, 6ua4:O, 6ua4:P, 6ua4:I, 6ua4:J, 6ua4:K, 6ua4:L, 6udo:I, 6udo:J, 6udo:K, 6udo:L, 6udo:M, 6udo:N, 6udo:P, 6udq:I, 6udq:J, 6udq:K, 6udq:L)
    MADYLISGGTSYVP
    		 1.1.1.205 GO:0000166 ... P12268 31999252
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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