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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3fv3:F
    (1.85)    		 BS01 >3fv3:N (identical to 6apr:I, 4auc:B, 4ejd:C, 4ejk:N, 3emy:B, 4er2:I, 3fnt:I, 3fv3:I, 3fv3:J, 3fv3:K, 3fv3:L, 3fv3:M, 3fv3:O, 3fv3:P, 2h6t:B, 5i70:C, 5i70:D, 1ize:B, 1ls5:C, 1ls5:D, 5lw1:L, 1lyb:I, 1lyb:J, 1m43:C, 1m43:D, 5n7q:I, 5n7q:J, 1pso:I, 1qs8:C, 1qs8:D, 2qzx:C, 2qzx:D, 6r6a:D, 2rmp:B, 1sme:C, 1sme:D, 4tvg:C, 1w6i:B, 1w6i:D, 1wkr:I, 1xdh:C, 1xdh:D, 4y9w:B)
    VVVLAL
    		 3.4.23.24 GO:0004190 ... P32951 19401235
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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