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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1fzg:E
    (2.5)    		 BS01 >1fzg:N (identical to 3e1i:G, 3e1i:H, 1fzc:I, 1fzc:J, 1fzf:S, 1fzf:T, 1fzf:M, 1fzf:N, 1fzg:S, 1fzg:T, 1fzg:M, 3ghg:O, 3ghg:P, 3ghg:S, 3ghg:T, 1ltj:H, 1ltj:J, 1lwu:M, 1lwu:N, 1lwu:O, 1lwu:P, 1m1j:I, 1m1j:J, 1n73:G, 1n73:H, 1n73:I, 1n73:J, 1n86:I, 1n86:J, 2oyh:G, 2oyh:H, 2oyh:I, 2oyh:J, 2q9i:S, 2q9i:T, 1re3:G, 1re3:H, 1rf1:G, 1rf1:H, 1rf1:I, 1rf1:J, 2z4e:S, 2z4e:T)
    GHRP
    		 ? GO:0005102 ... P02675 10074346
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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