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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wdu:L (2.24) BS07 FE ? GO:0009772 ... P51762 38347078
    2 8wdu:L (2.24) BS08 BCL ? GO:0009772 ... P51762 38347078
    3 8wdu:L (2.24) BS09 BPH ? GO:0009772 ... P51762 38347078
    4 8wdu:L (2.24) BS10 MQ8 ? GO:0009772 ... P51762 38347078
    5 8wdu:M (2.24) BS01 BPH ? GO:0009772 ... P51763 38347078
    6 8wdu:M (2.24) BS02 BCL ? GO:0009772 ... P51763 38347078
    7 8wdu:M (2.24) BS03 UQ8 ? GO:0009772 ... P51763 38347078
    8 8wdu:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    9 8wdu:M (2.24) BS05 BCL ? GO:0009772 ... P51763 38347078
    10 8wdu:M (2.24) BS06 BCL ? GO:0009772 ... P51763 38347078
    11 8wdu:M (2.24) BS07 BPH ? GO:0009772 ... P51763 38347078
    12 8wdu:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    13 8wdu:M (2.24) BS09 CRT ? GO:0009772 ... P51763 38347078
    14 8wdu:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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