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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7mud:ML
    (2.8)    		 BS01 >7mud:LU (identical to 8a22:Uj, 8a9l:B, 7aoi:UB, 8apn:Uj, 8apo:Uj, 8c0v:R, 5ejz:D, 3gd3:F, 4i79:C, 8j5q:E, 7lmz:G, 7ln0:G, 7ln1:G, 3lzb:E, 3lzb:H, 7muc:AU, 7muc:BU, 7muc:DU, 7muc:EU, 7muc:FU, 7muc:GU, 7muc:HU, 7muc:IU, 7muc:JU, 7muc:KU, 7muc:MU, 7mud:AU, 7mud:BU, 7mud:CU, 7mud:DU, 7mud:EU, 7mud:FU, 7mud:GU, 7mud:HU, 7mud:IU, 7mud:JU, 7mud:KU, 7mud:MU, 7muq:GU, 7muq:HU, 7muq:IU, 7muq:JU, 7muq:KU, 7muq:LU, 7muq:MU, 7muq:AU, 7muq:BU, 7muq:CU, 7muq:DU, 7muq:EU, 7muq:FU, 7mus:GU, 7mus:HU, 7mus:IU, 7mus:JU, 7mus:KU, 7mus:LU, 7mus:MU, 7mus:AU, 7mus:BU, 7mus:CU, 7mus:DU, 7mus:EU, 7mus:FU, 7muv:EU, 7muv:FU, 7muv:GU, 7muv:HU, 7muv:IU, 7muv:JU, 7muv:KU, 7muv:LU, 7muv:MU, 7muv:AU, 7muv:BU, 7muv:CU, 7muv:DU, 7muw:EU, 7muw:FU, 7muw:GU, 7muw:HU, 7muw:IU, 7muw:JU, 7muw:KU, 7muw:LU, 7muw:MU, 7muw:AU, 7muw:BU, 7muw:CU, 7muw:DU, 7muy:EU, 7muy:FU, 7muy:GU, 7muy:HU, 7muy:IU, 7muy:JU, 7muy:KU, 7muy:LU, 7muy:MU, 7muy:AU, 7muy:BU, 7muy:CU, 7muy:DU, 6nyy:I, 4p02:D, 7pua:UC, 8qlj:B, 8rbz:1, 3spa:B, 7sxo:G, 6up7:V, 6uqo:X, 6uqo:Y, 8w69:G, 4wz7:AB, 8xud:N, 2yjv:N, 6z7n:W, 6z7n:Z, 6z9l:G)
    AAAAAAAAA
    		 ? GO:0016020 ... Q5ZXS4 34519271
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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