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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8fkt:L6
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0001824 ... P26373 37410842
    2 8fkt:L9
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0002181 ... P61313 37410842
    3 8fkt:LA
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0002181 ... P18621 37410842
    4 8fkt:LH
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000027 ... P62750 37410842
    5 8fkt:LI
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0002181 ... P61254 37410842
    6 8fkt:LS
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000463 ... P42766 37410842
    7 8fkt:LW
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0002181 ... P61927 37410842
    8 8fkt:NS
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000460 ... Q9H9Y2 37410842
    9 8fkt:SA
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0002181 ... P36578 37410842
    10 8fkt:SE
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000470 ... P62424 37410842
    11 8fkt:SI
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000463 ... Q6DKI1 37410842
    12 8fkt:SM
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0000463 ... O00541 37410842
    13 8fkt:SZ
    (2.81)    		 BS01 >8fkt:L1 (identical to 8fkp:L1, 8fks:L1, 8fku:L1, 8fkv:L1, 8fkw:L1, 8fkx:L1)
    acucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcua
gcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuucg
aacgcacuugcggccccggguucccggggcuacgccugucugagcgucgc
uu
.......................................<<<<<<<<<..
..>>>>.....<.<<<......>>.............>>>..>...>>>.
...<<....>><<<<<<<<<..>>>>>>>>>...................
..
    		 ? GO:0003723 ... Q9Y3C1 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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