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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3wmm:L (3.008) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    2 3wmm:L (3.008) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    3 3wmm:L (3.008) BS03 UQ8 ? GO:0005515 ... D2Z0P3 24670637
    4 3wmm:L (3.008) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    5 3wmm:L (3.008) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    6 3wmm:L (3.008) BS06 BPH ? GO:0005515 ... D2Z0P3 24670637
    7 3wmm:L (3.008) BS07 FE ? GO:0005515 ... D2Z0P3 24670637
    8 3wmm:M (3.008) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    9 3wmm:M (3.008) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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