BioLiP

Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu
uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg
acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu
ucccguuc
..................................................
..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>..........
.................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<
<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>
>>>>>>>.

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6j6g:A (3.2)	BS05	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000244 ...	P33334	30879786
2	6j6g:I (3.2)	BS02	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000384 ...	P53277	30879786
3	6j6g:P (3.2)	BS03	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000350 ...	P28004	30879786
4	6j6g:Q (3.2)	BS02	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000398 ...	P38241	30879786
5	6j6g:R (3.2)	BS03	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000387 ...	Q12046	30879786
6	6j6g:S (3.2)	BS03	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000398 ...	Q03772	30879786
7	6j6g:a (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000398 ...	P40567	30879786
8	6j6g:c (3.2)	BS03	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000350 ...	Q03654	30879786
9	6j6g:e (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	Q06217	30879786
10	6j6g:n (3.2)	BS02	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000348 ...	P40968	30879786
11	6j6g:s (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	P40018	30879786
12	6j6g:u (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	Q12330	30879786
13	6j6g:w (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	P54999	30879786
14	6j6g:x (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	P40204	30879786
15	6j6g:y (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	P43321	30879786
16	6j6g:z (3.2)	BS01	>6j6g:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu cauguaacaacuaaugaccucagaggcucaauuuguuacaauacacauuu uuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcg acccucgcaggagucguucuugacuuuuuggucgcuugauguuucucucu ucccguuc .................................................. ..<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.......... .................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<< <.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>> >>>>>>>.	?	GO:0000243 ...	Q02260	30879786