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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5wsg:A
    (4.0)    		 BS05 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000244 ... P33334 27980089
    2 5wsg:F
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... P40018 27980089
    3 5wsg:G
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... Q12330 27980089
    4 5wsg:H
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... P54999 27980089
    5 5wsg:I
    (4.0)    		 BS02 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000384 ... P53277 27980089
    6 5wsg:K
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... P40204 27980089
    7 5wsg:P
    (4.0)    		 BS03 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000350 ... P28004 27980089
    8 5wsg:S
    (4.0)    		 BS03 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000398 ... Q03772 27980089
    9 5wsg:U
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... P43321 27980089
    10 5wsg:V
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... Q02260 27980089
    11 5wsg:W
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000243 ... Q06217 27980089
    12 5wsg:X
    (4.0)    		 BS01 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000398 ... P40567 27980089
    13 5wsg:c
    (4.0)    		 BS02 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000350 ... Q03654 27980089
    14 5wsg:n
    (4.0)    		 BS02 >5wsg:L (identical to 5ylz:F)
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caacauuuuuuggcaccgcgacccucgcacuuguggagucg
..................................................
................<<...<<...........>>...>>
    		 ? GO:0000348 ... P40968 27980089
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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