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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7tfc:H
    (1.96)    		 BS02 >7tfc:L (identical to 7tfc:D, 7tfc:E, 7tfc:J, 7tfc:K, 7tfc:M, 7tfc:U, 7tfc:V, 7tfc:W, 7tfc:X, 7tfc:Y, 7tfc:Z, 7tfc:a, 7tfc:b)
    TFRQGDMSRF
    		 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    2 7tfc:O
    (1.96)    		 BS01 >7tfc:L (identical to 7tfc:D, 7tfc:E, 7tfc:J, 7tfc:K, 7tfc:M, 7tfc:U, 7tfc:V, 7tfc:W, 7tfc:X, 7tfc:Y, 7tfc:Z, 7tfc:a, 7tfc:b)
    TFRQGDMSRF
    		 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    3 7tfc:S
    (1.96)    		 BS01 >7tfc:L (identical to 7tfc:D, 7tfc:E, 7tfc:J, 7tfc:K, 7tfc:M, 7tfc:U, 7tfc:V, 7tfc:W, 7tfc:X, 7tfc:Y, 7tfc:Z, 7tfc:a, 7tfc:b)
    TFRQGDMSRF
    		 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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