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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 6ysj:H
    (1.45)
    BS01 >6ysj:L (identical to 7ac9:L, 1ad8:L, 5af9:L, 5afy:L, 5afz:L, 1aht:L, 5ahg:L, 8ase:L, 8ase:A, 8asf:L, 8asf:A, 3bf6:L, 5cmx:L, 1d3d:A, 1d3p:A, 1d3q:A, 1d3t:A, 1d4p:A, 3d49:L, 1de7:L, 1dwe:L, 4e7r:L, 4e7r:M, 5ew2:L, 6fjt:L, 6gbw:L, 3gic:A, 1gj4:L, 1h8d:L, 2h9t:L, 6hsx:L, 6i51:L, 5lce:L, 5mls:L, 5mm6:L, 7ntu:A, 7ntu:C, 6pxj:A, 3qto:L, 3qtv:L, 3qwc:L, 3qx5:L, 3rlw:L, 3rly:L, 3rm0:L, 3rm2:L, 3rml:L, 3rmm:L, 3rmn:L, 3rmo:L, 6rot:L, 3sha:L, 3shc:L, 3si3:L, 3si4:L, 3sv2:L, 6t4a:L, 3t5f:L, 6t52:L, 6t53:L, 6t57:L, 6t89:L, 6t8a:L, 1tmu:L, 3u98:L, 3u9a:L, 4ud9:L, 4udw:L, 4ue7:L, 4ufe:L, 4ufg:L, 3uwj:L, 6y02:L, 6y9h:L, 6yb6:L, 6ymp:L, 6yn3:L, 6yqv:L, 6ysx:L, 6z48:L, 6z48:A, 2zc9:L, 2zdv:L, 2zf0:L, 2zff:L, 2zfp:L, 2zfr:L, 6zgo:L, 2zhq:L, 2ziq:L, 2znk:L)
    EADCGLRPLFEKKSLEDKTERELLESYI
    3.4.21.5 GO:0004252 ... P00734 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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