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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2bxu:H
    (2.8)    		 BS02 >2bxu:L (identical to 1a3b:L, 1a3e:L, 1a5g:L, 1a61:L, 1abj:L, 1ai8:L, 1aix:L, 1awf:L, 4ax9:L, 4bak:A, 4bam:A, 4ban:A, 4bao:A, 4baq:A, 2bvr:L, 2bvs:L, 2bvx:L, 2bxt:L, 1c4y:1, 6cym:B, 3da9:A, 3dhk:L, 4dih:L, 4dii:L, 3dux:L, 1eb1:L, 3eq0:L, 3f68:L, 2gde:L, 1h8i:L, 1hao:L, 1hap:L, 1hbt:L, 1hlt:L, 1hlt:J, 4i7y:L, 1k21:L, 4loy:L, 4lxb:L, 7mj5:D, 7mj5:F, 7mj5:K, 1nrs:L, 1oyt:L, 3p17:L, 2pks:A, 3po1:A, 2pw8:L, 1qur:L, 1riw:A, 3s7h:A, 1sg8:A, 1sg8:D, 6t54:L, 1thp:A, 3u8r:L, 3u8t:L, 4ufd:L, 4uff:L, 1uvs:L, 1vr1:L, 1vzq:L, 1ype:L, 1ypg:L, 1ypj:L, 1ypk:L, 1ypl:L, 1ypm:L, 6z8v:L, 6z8w:L, 2zfq:L, 2zg0:L, 2zgb:L, 2zgx:L, 2zhe:L, 2zhf:L, 2zhw:L, 2zi2:L, 7zkm:L, 7zko:L, 2zo3:L, 6zug:L, 6zuh:L, 6zun:L, 6zuu:L, 6zuw:L, 6zux:L, 6zv7:L, 6zv8:L)
    ADCGLRPLFEKKSLEDKTERELLESYI
    		 3.4.21.5 GO:0004252 ... P00734 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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