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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8qo1:Fg
    (9.76)
    BS01 >8qo1:Iq (identical to 8phs:AI, 8phs:CB, 8phs:CJ, 8phs:CT, 8phu:AI, 8phu:CB, 8phu:CJ, 8phu:CT, 8phu:DI, 8phu:FB, 8phu:FJ, 8phu:FT, 8phu:GI, 8phu:IB, 8phu:IJ, 8phu:IT, 8phu:JI, 8phu:LB, 8phu:LJ, 8phu:LT, 8phu:MI, 8phu:OB, 8phu:OJ, 8phu:OT, 8pkh:HM, 8pkh:IB, 8pkh:ID, 8pkh:IH, 8qo0:Dm, 8qo0:EB, 8qo0:ED, 8qo0:EH, 8qo0:Ib, 8qo0:Iq, 8qo0:Is, 8qo0:Iw, 8qo0:NQ, 8qo0:Nf, 8qo0:Nh, 8qo0:Nl, 8qo0:SF, 8qo0:SU, 8qo0:SW, 8qo0:Sa, 8qo0:Wu, 8qo0:XJ, 8qo0:XL, 8qo0:XP, 8qo1:Dm, 8qo1:EB, 8qo1:ED, 8qo1:EH, 8qo1:Ib, 8qo1:Is, 8qo1:Iw, 8qo1:NQ, 8qo1:Nf, 8qo1:Nh, 8qo1:Nl, 8qo1:SF, 8qo1:SU, 8qo1:SW, 8qo1:Sa, 8qo1:Wu, 8qo1:XJ, 8qo1:XL, 8qo1:XP)
    VPINFTEFVQAISNTYKQRRIQFYENLKR
    ? N/A Q9R3U6 37866476

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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