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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1cgm:E
    (3.4)    		 BS01 >1cgm:I (identical to 5a79:R, 5a7a:R, 2om3:R, 7p9i:D, 7p9i:E, 3pdm:R, 7q22:B, 7q23:B, 7q2q:B, 7q2r:B, 7q2s:B, 6rlp:R, 6rlp:Z, 6rlp:a, 6rlp:b, 6rlp:c, 6rlp:d, 6rlp:e, 6rlp:f, 6rlp:g, 6rlp:h, 6rlp:i, 6rlp:j, 6rlp:k, 6rlp:l, 6rlp:m, 6rlp:n, 6rlp:o, 6rlp:p, 6rlp:q, 6rlp:r, 6rlp:s, 6rlp:t, 6rlp:u, 6rlp:v, 1rmv:B, 6sae:R, 6sag:R, 2tmv:R, 8u3b:3, 4udv:R, 1vtm:R, 2xea:R)
    gaa
...
    		 ? GO:0005198 ... P69475 8201619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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