Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7pm6:C
    (3.0)
    BS02 >7pm6:I (identical to 9fjm:H, 9fjm:I, 9fjm:K, 9fjm:J, 9fju:H, 9fju:I, 9fju:J, 9fjy:H, 9fjy:I, 9fjy:J, 8oi6:H, 8oi6:I, 8oi6:J, 7p1g:H, 7p1g:F, 7p1g:G, 7p1g:I, 7p1g:J, 8p94:a, 8p94:b, 8p94:c, 8p94:d, 8p94:h, 8p94:i, 8p94:j, 8p94:k, 8p94:l, 8p94:m, 7plt:H, 7plu:H, 7plu:I, 7plu:J, 7plv:H, 7plw:H, 7plx:H, 7pm5:H, 7pm6:H, 7pm6:J, 7pm7:H, 7pm8:H, 7pm9:H, 7pma:H, 7pmb:H, 7pmc:H, 7pmd:H, 7pme:H, 7pme:I, 7pme:J, 7pmf:H, 7pmg:H, 7pmh:H, 7pmi:H, 7pmj:H, 7pml:H, 8rtt:H, 8rtt:I, 8rtt:J, 8rty:H, 8rty:I, 8rty:J, 6t1y:F, 6t1y:G, 6t1y:H, 6t1y:I, 6t1y:J, 6t20:F, 6t20:G, 6t20:H, 6t20:I, 6t20:J, 6t25:F, 6t25:G, 6t25:H, 6t25:I, 6t25:J, 7tpt:a, 7tpt:b, 7tpt:c, 7tpt:d, 7tpt:f, 7tpt:g, 7tpt:h, 7tpt:i, 7tpt:j, 7tpt:k, 7tpt:l, 7tpt:m, 8v30:F, 8v30:G, 8v30:H, 8v30:I, 8v30:J)
    WLATCPA
    3.6.4.- GO:0000287 ... P68135 34812732
    2 7pm6:F
    (3.0)
    BS01 >7pm6:I (identical to 9fjm:H, 9fjm:I, 9fjm:K, 9fjm:J, 9fju:H, 9fju:I, 9fju:J, 9fjy:H, 9fjy:I, 9fjy:J, 8oi6:H, 8oi6:I, 8oi6:J, 7p1g:H, 7p1g:F, 7p1g:G, 7p1g:I, 7p1g:J, 8p94:a, 8p94:b, 8p94:c, 8p94:d, 8p94:h, 8p94:i, 8p94:j, 8p94:k, 8p94:l, 8p94:m, 7plt:H, 7plu:H, 7plu:I, 7plu:J, 7plv:H, 7plw:H, 7plx:H, 7pm5:H, 7pm6:H, 7pm6:J, 7pm7:H, 7pm8:H, 7pm9:H, 7pma:H, 7pmb:H, 7pmc:H, 7pmd:H, 7pme:H, 7pme:I, 7pme:J, 7pmf:H, 7pmg:H, 7pmh:H, 7pmi:H, 7pmj:H, 7pml:H, 8rtt:H, 8rtt:I, 8rtt:J, 8rty:H, 8rty:I, 8rty:J, 6t1y:F, 6t1y:G, 6t1y:H, 6t1y:I, 6t1y:J, 6t20:F, 6t20:G, 6t20:H, 6t20:I, 6t20:J, 6t25:F, 6t25:G, 6t25:H, 6t25:I, 6t25:J, 7tpt:a, 7tpt:b, 7tpt:c, 7tpt:d, 7tpt:f, 7tpt:g, 7tpt:h, 7tpt:i, 7tpt:j, 7tpt:k, 7tpt:l, 7tpt:m, 8v30:F, 8v30:G, 8v30:H, 8v30:I, 8v30:J)
    WLATCPA
    3.6.4.- GO:0000287 ... P68135 34812732

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218