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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3fjq:E
    (1.6)    		 BS01 >3fjq:I (identical to 4c36:I, 4c38:I, 4dg3:A, 3e8c:J, 8fe2:J, 3l9l:C, 3l9m:C, 3l9n:C, 5lcr:B, 5m0b:B, 5m0c:B, 5m75:B, 3ow3:B, 3owp:B, 3p0m:B, 7pif:B, 7pig:B, 7pih:B, 3poo:B, 3qam:I, 1sve:B, 1svh:B, 7ujx:I, 7v0g:I, 4wb6:I, 6y0b:B, 6y89:B, 6ynr:B, 6ynt:B, 6yot:B)
    TTYADFIASGRTGRRNAIH
    		 2.7.11.11 GO:0000122 ... P05132 19610074
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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