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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kif:G (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    2 6kif:G (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    3 6kif:G (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    4 6kif:G (3.3) BS51 CLA 1.97.1.12 GO:0000287 ... Q31LJ0 32042157
    5 6kif:H (3.3) BS01 peptide 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    6 6kif:H (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    7 6kif:H (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    8 6kif:H (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    9 6kif:H (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    10 6kif:H (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    11 6kif:H (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    12 6kif:H (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    13 6kif:H (3.3) BS09 SF4 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    14 6kif:H (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    15 6kif:H (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    16 6kif:H (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    17 6kif:H (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    18 6kif:H (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    19 6kif:H (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    20 6kif:H (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    21 6kif:H (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    22 6kif:H (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    23 6kif:H (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    24 6kif:H (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    25 6kif:H (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    26 6kif:H (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    27 6kif:H (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    28 6kif:H (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    29 6kif:H (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    30 6kif:H (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    31 6kif:H (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    32 6kif:H (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    33 6kif:H (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    34 6kif:H (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    35 6kif:H (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    36 6kif:H (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    37 6kif:H (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    38 6kif:H (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    39 6kif:H (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    40 6kif:H (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    41 6kif:H (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    42 6kif:H (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    43 6kif:H (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    44 6kif:H (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    45 6kif:H (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    46 6kif:H (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    47 6kif:H (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    48 6kif:H (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    49 6kif:H (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    50 6kif:H (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    51 6kif:H (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    52 6kif:H (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    53 6kif:H (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    54 6kif:H (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    55 6kif:H (3.3) BS51 PQN 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    56 6kif:H (3.3) BS52 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    57 6kif:H (3.3) BS53 CLA 1.97.1.12 GO:0000287 ... Q31LJ1 32042157
    58 6kif:R (3.3) BS03 CLA ? GO:0009522 ... Q31NT9 32042157
    59 6kif:R (3.3) BS04 CLA ? GO:0009522 ... Q31NT9 32042157
    60 6kif:S (3.3) BS02 CLA ? GO:0009522 ... P95823 32042157
    61 6kif:S (3.3) BS03 CLA ? GO:0009522 ... P95823 32042157
    62 6kif:S (3.3) BS04 CLA ? GO:0009522 ... P95823 32042157
    63 6kif:T (3.3) BS03 CLA ? GO:0009522 ... Q31NU0 32042157
    64 6kif:V (3.3) BS05 CLA ? GO:0009522 ... P95822 32042157
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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