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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5c13:C
    (2.101)    		 BS02 >5c13:H (identical to 4a0j:C, 4a7j:B, 6aze:P, 2b2v:D, 5c13:P, 5c13:D, 5c13:F, 2f6j:P, 2fsa:P, 4gne:B, 2h9m:B, 8i3f:C, 6j2p:F, 6j2p:G, 6j2p:H, 3kqi:B, 7lbo:F, 7lbp:B, 7lbp:D, 3lqi:R, 3lqj:Q, 3lqj:T, 6lqf:P, 4mzg:C, 3n9l:B, 3n9n:B, 3n9o:B, 3n9p:B, 3n9q:B, 4o62:D, 3o7a:B, 1o9s:L, 2o9k:B, 2ri7:P, 3sow:C, 3sow:D, 3ued:B, 3ued:D, 4up0:F, 4uy4:C, 4uy4:D, 2vnf:B, 2yyr:P)
    ARTKQT
    		 ? N/A Q5VWG9 N/A
    2 5c13:G
    (2.101)    		 BS01 >5c13:H (identical to 4a0j:C, 4a7j:B, 6aze:P, 2b2v:D, 5c13:P, 5c13:D, 5c13:F, 2f6j:P, 2fsa:P, 4gne:B, 2h9m:B, 8i3f:C, 6j2p:F, 6j2p:G, 6j2p:H, 3kqi:B, 7lbo:F, 7lbp:B, 7lbp:D, 3lqi:R, 3lqj:Q, 3lqj:T, 6lqf:P, 4mzg:C, 3n9l:B, 3n9n:B, 3n9o:B, 3n9p:B, 3n9q:B, 4o62:D, 3o7a:B, 1o9s:L, 2o9k:B, 2ri7:P, 3sow:C, 3sow:D, 3ued:B, 3ued:D, 4up0:F, 4uy4:C, 4uy4:D, 2vnf:B, 2yyr:P)
    ARTKQT
    		 ? N/A Q5VWG9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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