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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1m1j:F
    (2.7)    		 BS01 >1m1j:H (identical to 3bvh:G, 3bvh:I, 3bvh:H, 3bvh:J, 2fib:B, 1fzb:G, 1fzb:H, 1fzc:G, 1fzc:H, 3ghg:M, 3ghg:N, 3ghg:Q, 3ghg:R, 2hlo:G, 2hlo:H, 2hod:M, 2hod:N, 2hod:O, 2hod:P, 2hod:Q, 2hod:R, 2hod:S, 2hod:T, 2hpc:M, 2hpc:N, 2hpc:O, 2hpc:P, 2hpc:Q, 2hpc:R, 2hpc:S, 2hpc:T, 3hus:G, 3hus:H, 3hus:I, 3hus:J, 1ltj:G, 1ltj:I, 1m1j:G, 2oyi:G, 2oyi:H, 2oyi:I, 2oyi:J)
    GPRP
    		 ? GO:0005102 ... O93568 11601975
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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