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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4ibu:C
    (1.7)    		 BS02 >4ibu:H (identical to 2ac0:E, 2ac0:F, 2ac0:G, 2ac0:H, 7b46:G, 7b46:H, 7b4d:C, 7b4g:B, 7b4h:B, 7b4n:B, 3d0a:E, 3d0a:G, 3d0a:H, 4ibu:G, 4ibw:B, 3igk:B, 3igl:B, 3vd1:E, 3vd1:F, 3vd1:G, 3vd1:H, 3vd1:M, 3vd1:N, 3vd1:O, 3vd1:P, 6znc:B)
    cgggcatgcccg
    		 ? GO:0000976 ... P04637 23863845
    2 4ibu:D
    (1.7)    		 BS02 >4ibu:H (identical to 2ac0:E, 2ac0:F, 2ac0:G, 2ac0:H, 7b46:G, 7b46:H, 7b4d:C, 7b4g:B, 7b4h:B, 7b4n:B, 3d0a:E, 3d0a:G, 3d0a:H, 4ibu:G, 4ibw:B, 3igk:B, 3igl:B, 3vd1:E, 3vd1:F, 3vd1:G, 3vd1:H, 3vd1:M, 3vd1:N, 3vd1:O, 3vd1:P, 6znc:B)
    cgggcatgcccg
    		 ? GO:0000976 ... P04637 23863845
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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