Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8ddq:C
    (2.7)
    BS01 >8ddq:G (identical to 8agu:1, 8agw:1, 7aoi:UH, 6ccv:G, 8ddq:E, 8ddq:F, 8ddq:H, 8ddr:E, 8ddr:F, 8ddr:G, 8ddr:H, 8dds:E, 8dds:F, 8dds:G, 8dds:H, 8ddt:E, 8ddt:F, 8ddt:G, 8ddt:H, 8ddu:E, 8ddu:F, 8ddu:G, 8ddu:H, 8ddv:E, 8ddv:F, 8ddv:G, 8ddv:H, 8ddw:E, 8ddw:F, 8ddw:G, 8ddw:H, 8ddx:E, 8ddx:F, 8ddx:G, 8ddx:H, 8ed7:E, 8ed7:F, 8ed7:G, 8ed7:H, 8ed8:E, 8ed8:F, 8ed8:G, 8ed8:H, 8ed9:E, 8ed9:F, 8ed9:G, 8ed9:H, 8eio:B, 8gls:B, 8gym:qM, 8gym:qm, 8gym:Qm, 8gym:u2, 8gym:U2, 8gym:QM, 8gzu:0J, 8gzu:54, 8gzu:qM, 8gzu:qm, 8gzu:QM, 8gzu:Qm, 8gzu:u2, 8gzu:U2, 6h8k:Z, 3hdi:D, 6iaw:X, 3jd5:z, 6msm:B, 6o1v:B, 6o2p:B, 6q3g:PD, 6q3g:PJ, 6q3g:PK, 6q3g:PP, 6q3g:PS, 7sv7:B, 7svd:B, 8tj5:7, 8tj5:8, 8tj5:c, 8tj5:h, 5tw1:G, 6vvs:G, 7xbk:L)
    AAAAAAAAAAAAAAAAA
    ? GO:0005216 ... Q5F4S7 36283409

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218