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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7z11:A
    (3.2)    		 BS01 >7z11:G (identical to 7a23:s, 3chx:D, 3chx:H, 3chx:L, 7emf:B, 7enj:B, 8ez9:R, 8ez9:Q, 8eza:R, 8eza:Q, 6hwh:I, 7lt3:Q, 7lt3:R, 5nbl:H, 4phz:H, 4pi0:H, 4pi2:H, 7pub:UL, 6qj3:C, 7tbm:m2, 4v3p:Ly, 4v3p:Lx, 4v6i:Bx, 4xwo:a, 6z3t:C)
    AAAAAAAAAAAAAAAAAAAA
    		 3.6.4.10 GO:0005515 ... P32794 36097293
    2 7z11:B
    (3.2)    		 BS01 >7z11:G (identical to 7a23:s, 3chx:D, 3chx:H, 3chx:L, 7emf:B, 7enj:B, 8ez9:R, 8ez9:Q, 8eza:R, 8eza:Q, 6hwh:I, 7lt3:Q, 7lt3:R, 5nbl:H, 4phz:H, 4pi0:H, 4pi2:H, 7pub:UL, 6qj3:C, 7tbm:m2, 4v3p:Ly, 4v3p:Lx, 4v6i:Bx, 4xwo:a, 6z3t:C)
    AAAAAAAAAAAAAAAAAAAA
    		 3.6.4.10 GO:0005515 ... P32794 36097293
    3 7z11:C
    (3.2)    		 BS01 >7z11:G (identical to 7a23:s, 3chx:D, 3chx:H, 3chx:L, 7emf:B, 7enj:B, 8ez9:R, 8ez9:Q, 8eza:R, 8eza:Q, 6hwh:I, 7lt3:Q, 7lt3:R, 5nbl:H, 4phz:H, 4pi0:H, 4pi2:H, 7pub:UL, 6qj3:C, 7tbm:m2, 4v3p:Ly, 4v3p:Lx, 4v6i:Bx, 4xwo:a, 6z3t:C)
    AAAAAAAAAAAAAAAAAAAA
    		 3.6.4.10 GO:0005515 ... P32794 36097293
    4 7z11:D
    (3.2)    		 BS01 >7z11:G (identical to 7a23:s, 3chx:D, 3chx:H, 3chx:L, 7emf:B, 7enj:B, 8ez9:R, 8ez9:Q, 8eza:R, 8eza:Q, 6hwh:I, 7lt3:Q, 7lt3:R, 5nbl:H, 4phz:H, 4pi0:H, 4pi2:H, 7pub:UL, 6qj3:C, 7tbm:m2, 4v3p:Ly, 4v3p:Lx, 4v6i:Bx, 4xwo:a, 6z3t:C)
    AAAAAAAAAAAAAAAAAAAA
    		 3.6.4.10 GO:0005515 ... P32794 36097293
    5 7z11:F
    (3.2)    		 BS01 >7z11:G (identical to 7a23:s, 3chx:D, 3chx:H, 3chx:L, 7emf:B, 7enj:B, 8ez9:R, 8ez9:Q, 8eza:R, 8eza:Q, 6hwh:I, 7lt3:Q, 7lt3:R, 5nbl:H, 4phz:H, 4pi0:H, 4pi2:H, 7pub:UL, 6qj3:C, 7tbm:m2, 4v3p:Ly, 4v3p:Lx, 4v6i:Bx, 4xwo:a, 6z3t:C)
    AAAAAAAAAAAAAAAAAAAA
    		 3.6.4.10 GO:0005515 ... P32794 36097293
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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