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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6on2:B
    (3.0)    		 BS01 >6on2:G (identical to 4aui:F, 5ej1:D, 8kic:I, 3lzb:F, 3lzb:G, 4naq:B, 7oen:E, 3okr:F, 3ou0:C, 8ovc:E, 8ovc:f, 6oxl:n, 7p6u:S, 3p7o:C, 3pv3:F, 3qo6:D, 3stj:Z, 8sxe:D, 8sxh:D, 8sxh:H, 8sxh:L, 6uj0:C, 6vfs:G, 8w69:H, 8w69:I, 3wa0:I, 3wsz:C, 4x2v:F, 4ynn:K, 4ynn:M, 4ynn:N, 4ynn:O, 4ynn:P)
    AAAAAAA
    		 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    2 6on2:C
    (3.0)    		 BS01 >6on2:G (identical to 4aui:F, 5ej1:D, 8kic:I, 3lzb:F, 3lzb:G, 4naq:B, 7oen:E, 3okr:F, 3ou0:C, 8ovc:E, 8ovc:f, 6oxl:n, 7p6u:S, 3p7o:C, 3pv3:F, 3qo6:D, 3stj:Z, 8sxe:D, 8sxh:D, 8sxh:H, 8sxh:L, 6uj0:C, 6vfs:G, 8w69:H, 8w69:I, 3wa0:I, 3wsz:C, 4x2v:F, 4ynn:K, 4ynn:M, 4ynn:N, 4ynn:O, 4ynn:P)
    AAAAAAA
    		 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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