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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6jq0:A
    (3.54)    		 BS01 >6jq0:G (identical to 7aoi:UC, 5c3l:H, 3hdi:C, 8sqm:B, 7ttr:P, 7tts:P, 7us2:P, 4xwo:g, 7z30:X)
    AAAAAAAAAAAAAA
    		 3.6.1.- GO:0000785 ... O14114 31848341
    2 6jq0:B
    (3.54)    		 BS01 >6jq0:G (identical to 7aoi:UC, 5c3l:H, 3hdi:C, 8sqm:B, 7ttr:P, 7tts:P, 7us2:P, 4xwo:g, 7z30:X)
    AAAAAAAAAAAAAA
    		 3.6.1.- GO:0000785 ... O14114 31848341
    3 6jq0:C
    (3.54)    		 BS01 >6jq0:G (identical to 7aoi:UC, 5c3l:H, 3hdi:C, 8sqm:B, 7ttr:P, 7tts:P, 7us2:P, 4xwo:g, 7z30:X)
    AAAAAAAAAAAAAA
    		 3.6.1.- GO:0000785 ... O14114 31848341
    4 6jq0:F
    (3.54)    		 BS01 >6jq0:G (identical to 7aoi:UC, 5c3l:H, 3hdi:C, 8sqm:B, 7ttr:P, 7tts:P, 7us2:P, 4xwo:g, 7z30:X)
    AAAAAAAAAAAAAA
    		 3.6.1.- GO:0000785 ... O14114 31848341
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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