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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7mpm:E
    (1.95)    		 BS02 >7mpm:F (identical to 6e0o:C, 6e0o:B, 3gpq:E, 3gpq:F, 8jbb:C, 8jbb:D, 5jju:C, 4lj0:E, 7mpm:B, 7mpm:D, 7mpm:H, 7mpm:J, 7mpm:L, 7mpm:N, 7mpm:P, 6n6c:D, 6n6j:D, 6n6j:C, 6o75:C, 6o75:D, 6p7q:D, 6p7q:E, 6p7q:F, 4pei:Y, 6r7b:E, 6r9r:E, 6rcl:C, 8y7g:D, 8y7g:E)
    aa
..
    		 ? GO:0003676 ... X5MEI1 34533457
    2 7mpm:I
    (1.95)    		 BS01 >7mpm:F (identical to 6e0o:C, 6e0o:B, 3gpq:E, 3gpq:F, 8jbb:C, 8jbb:D, 5jju:C, 4lj0:E, 7mpm:B, 7mpm:D, 7mpm:H, 7mpm:J, 7mpm:L, 7mpm:N, 7mpm:P, 6n6c:D, 6n6j:D, 6n6j:C, 6o75:C, 6o75:D, 6p7q:D, 6p7q:E, 6p7q:F, 4pei:Y, 6r7b:E, 6r9r:E, 6rcl:C, 8y7g:D, 8y7g:E)
    aa
..
    		 ? GO:0003676 ... X5MEI1 34533457
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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