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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6m6v:A
    (3.08)    		 BS01 >6m6v:F (identical to 2a1r:C, 2a1r:D, 9ash:P, 6hyu:D, 8kbc:N, 8kbc:O, 8kbc:P, 8kbc:Q, 8kbf:C, 8kbf:D, 8kbh:J, 8kbh:K, 8kbh:L, 6m6v:E, 6m6v:G, 6o78:E, 6o79:C, 4oau:A, 8oiv:D, 6ov0:F, 6ov0:G, 6p7p:D, 6p7p:E, 6p7p:F, 8pe3:D, 8pe3:F, 6q1h:D, 6q1h:H, 7qqk:E, 7qqk:F, 7qqk:G, 7qqk:H, 7soq:B, 7sor:B, 7sor:D, 7sot:B, 7sou:B, 8tl0:E, 8tl0:F, 8tl0:G, 8tl0:H, 8tl0:J, 8tl0:M, 8tl0:N, 4tu0:F, 4tu0:G, 5udj:B, 6vm6:G, 6vm6:H, 6vm6:I, 6vm6:J, 6vm6:K, 6wan:G, 6wan:H, 6wan:I, 6wan:J, 6wan:K, 6wan:L, 6ywo:E, 6ywo:I, 6ywo:F, 6ywo:K, 7zgv:D)
    aaa
...
    		 2.7.7.108 GO:0003674 ... Q8ECH7 33045733
    2 6m6v:C
    (3.08)    		 BS01 >6m6v:F (identical to 2a1r:C, 2a1r:D, 9ash:P, 6hyu:D, 8kbc:N, 8kbc:O, 8kbc:P, 8kbc:Q, 8kbf:C, 8kbf:D, 8kbh:J, 8kbh:K, 8kbh:L, 6m6v:E, 6m6v:G, 6o78:E, 6o79:C, 4oau:A, 8oiv:D, 6ov0:F, 6ov0:G, 6p7p:D, 6p7p:E, 6p7p:F, 8pe3:D, 8pe3:F, 6q1h:D, 6q1h:H, 7qqk:E, 7qqk:F, 7qqk:G, 7qqk:H, 7soq:B, 7sor:B, 7sor:D, 7sot:B, 7sou:B, 8tl0:E, 8tl0:F, 8tl0:G, 8tl0:H, 8tl0:J, 8tl0:M, 8tl0:N, 4tu0:F, 4tu0:G, 5udj:B, 6vm6:G, 6vm6:H, 6vm6:I, 6vm6:J, 6vm6:K, 6wan:G, 6wan:H, 6wan:I, 6wan:J, 6wan:K, 6wan:L, 6ywo:E, 6ywo:I, 6ywo:F, 6ywo:K, 7zgv:D)
    aaa
...
    		 3.1.-.- GO:0000166 ... Q8ECH6 33045733
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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