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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8rt8:D
    (3.05)    		 BS01 >8rt8:F (identical to 7o3j:C, 7o3j:F, 7o3j:I, 7o3j:L, 7o3j:O, 7o3j:R, 7o3j:U, 7o3j:X, 7o3j:a, 7o3j:d, 7o3j:g, 7o3j:j, 7o3j:m, 7o3j:p, 8rt4:C, 8rt4:F, 8rt4:I, 8rt4:L, 8rt4:O, 8rt4:R, 8rt4:U, 8rt4:X, 8rt4:a, 8rt4:d, 8rt4:g, 8rt4:j, 8rt4:m, 8rt4:p, 8rt6:C, 8rt6:F, 8rt6:I, 8rt6:L, 8rt6:O, 8rt6:R, 8rt6:U, 8rt6:X, 8rt6:a, 8rt6:d, 8rt6:g, 8rt6:j, 8rt6:m, 8rt6:p, 8rt7:C, 8rt7:F, 8rt7:I, 8rt7:L, 8rt7:O, 8rt7:R, 8rt7:U, 8rt7:X, 8rt7:a, 8rt7:d, 8rt7:g, 8rt7:j, 8rt7:m, 8rt7:p, 8rt8:C, 8rt8:I, 8rt8:L, 8rt8:O, 8rt8:R, 8rt8:U, 8rt8:X, 8rt8:a, 8rt8:d, 8rt8:g, 8rt8:j, 8rt8:m, 8rt8:p)
    CASAPKPKQPSDFNREPVNKTVPVEIQR
    		 N/A GO:0005515 ... O50337 38886579
    2 8rt8:E
    (3.05)    		 BS01 >8rt8:F (identical to 7o3j:C, 7o3j:F, 7o3j:I, 7o3j:L, 7o3j:O, 7o3j:R, 7o3j:U, 7o3j:X, 7o3j:a, 7o3j:d, 7o3j:g, 7o3j:j, 7o3j:m, 7o3j:p, 8rt4:C, 8rt4:F, 8rt4:I, 8rt4:L, 8rt4:O, 8rt4:R, 8rt4:U, 8rt4:X, 8rt4:a, 8rt4:d, 8rt4:g, 8rt4:j, 8rt4:m, 8rt4:p, 8rt6:C, 8rt6:F, 8rt6:I, 8rt6:L, 8rt6:O, 8rt6:R, 8rt6:U, 8rt6:X, 8rt6:a, 8rt6:d, 8rt6:g, 8rt6:j, 8rt6:m, 8rt6:p, 8rt7:C, 8rt7:F, 8rt7:I, 8rt7:L, 8rt7:O, 8rt7:R, 8rt7:U, 8rt7:X, 8rt7:a, 8rt7:d, 8rt7:g, 8rt7:j, 8rt7:m, 8rt7:p, 8rt8:C, 8rt8:I, 8rt8:L, 8rt8:O, 8rt8:R, 8rt8:U, 8rt8:X, 8rt8:a, 8rt8:d, 8rt8:g, 8rt8:j, 8rt8:m, 8rt8:p)
    CASAPKPKQPSDFNREPVNKTVPVEIQR
    		 N/A N/A O50336 38886579
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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