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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7od8:A
    (3.0)    		 BS01 >7od8:F (identical to 4cic:Q, 3drh:B, 6e11:0, 4iox:D, 7jr9:G, 7jrj:L, 8jut:G, 8jut:N, 8juu:M, 8jxb:Q, 8jxh:Q, 8jxi:G, 3naz:F, 6nir:X, 4nz8:C, 7od6:F, 7od6:E, 7od8:E, 7oen:F, 7oev:E, 7oev:F, 7oew:E, 7oew:F, 3pv3:E, 3pv3:G, 8px3:F, 8px3:E, 6r19:F, 8sw1:B, 8sxf:D, 8sxg:D, 5tx1:Z, 5una:O, 3wa0:K, 5wql:F, 5wql:H, 2yjv:M, 4ynn:J, 4ynn:L, 6z7n:Y)
    AAAAAA
    		 ? GO:0003677 ... P03146 33946808
    2 7od8:B
    (3.0)    		 BS01 >7od8:F (identical to 4cic:Q, 3drh:B, 6e11:0, 4iox:D, 7jr9:G, 7jrj:L, 8jut:G, 8jut:N, 8juu:M, 8jxb:Q, 8jxh:Q, 8jxi:G, 3naz:F, 6nir:X, 4nz8:C, 7od6:F, 7od6:E, 7od8:E, 7oen:F, 7oev:E, 7oev:F, 7oew:E, 7oew:F, 3pv3:E, 3pv3:G, 8px3:F, 8px3:E, 6r19:F, 8sw1:B, 8sxf:D, 8sxg:D, 5tx1:Z, 5una:O, 3wa0:K, 5wql:F, 5wql:H, 2yjv:M, 4ynn:J, 4ynn:L, 6z7n:Y)
    AAAAAA
    		 ? GO:0003677 ... P03146 33946808
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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