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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5btg:A
    (2.5)    		 BS02 >5btg:F (identical to 5bs8:F, 5bs8:G, 5bta:F, 5bta:G, 5btc:F, 5btc:G, 5btd:F, 5btd:G, 5btf:F, 5btf:G, 5btg:G, 5bti:F, 5bti:G, 5btl:F, 5btl:G, 5btn:F, 5btn:G)
    acgtgcatagtcattcatgac
    		 5.6.2.2 GO:0003677 ... P9WG47 26792525
    2 5btg:B
    (2.5)    		 BS02 >5btg:F (identical to 5bs8:F, 5bs8:G, 5bta:F, 5bta:G, 5btc:F, 5btc:G, 5btd:F, 5btd:G, 5btf:F, 5btf:G, 5btg:G, 5bti:F, 5bti:G, 5btl:F, 5btl:G, 5btn:F, 5btn:G)
    acgtgcatagtcattcatgac
    		 5.6.2.2 GO:0003677 ... P9WG45 26792525
    3 5btg:C
    (2.5)    		 BS02 >5btg:F (identical to 5bs8:F, 5bs8:G, 5bta:F, 5bta:G, 5btc:F, 5btc:G, 5btd:F, 5btd:G, 5btf:F, 5btf:G, 5btg:G, 5bti:F, 5bti:G, 5btl:F, 5btl:G, 5btn:F, 5btn:G)
    acgtgcatagtcattcatgac
    		 5.6.2.2 GO:0003677 ... P9WG47 26792525
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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