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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8dds:A
    (3.5)
    BS01 >8dds:E (identical to 8agu:1, 8agw:1, 7aoi:UH, 6ccv:G, 8ddq:E, 8ddq:F, 8ddq:G, 8ddq:H, 8ddr:E, 8ddr:F, 8ddr:G, 8ddr:H, 8dds:F, 8dds:G, 8dds:H, 8ddt:E, 8ddt:F, 8ddt:G, 8ddt:H, 8ddu:E, 8ddu:F, 8ddu:G, 8ddu:H, 8ddv:E, 8ddv:F, 8ddv:G, 8ddv:H, 8ddw:E, 8ddw:F, 8ddw:G, 8ddw:H, 8ddx:E, 8ddx:F, 8ddx:G, 8ddx:H, 8ed7:E, 8ed7:F, 8ed7:G, 8ed7:H, 8ed8:E, 8ed8:F, 8ed8:G, 8ed8:H, 8ed9:E, 8ed9:F, 8ed9:G, 8ed9:H, 8eio:B, 8gls:B, 8gym:qM, 8gym:qm, 8gym:Qm, 8gym:u2, 8gym:U2, 8gym:QM, 8gzu:0J, 8gzu:54, 8gzu:qM, 8gzu:qm, 8gzu:QM, 8gzu:Qm, 8gzu:u2, 8gzu:U2, 6h8k:Z, 3hdi:D, 6iaw:X, 3jd5:z, 6msm:B, 6o1v:B, 6o2p:B, 6q3g:PD, 6q3g:PJ, 6q3g:PK, 6q3g:PP, 6q3g:PS, 7sv7:B, 7svd:B, 8tj5:7, 8tj5:8, 8tj5:c, 8tj5:h, 5tw1:G, 6vvs:G, 7xbk:L)
    AAAAAAAAAAAAAAAAA
    ? GO:0005216 ... Q5F4S7 36283409

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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